| Protein ZmIAA6 | |
|---|---|
|
ZmIAA6 is a protein in the Aux/IAA family.
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| Information | |
| Coreg Name: | ZmIAA6 |
| Species: | Maize |
| Coreg Family: | Aux/IAA |
| Gene Name(Synonym): | IAA9 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmIAA6
ZmIAA6 is a protein in the Aux/IAA family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
| Overview of domains present in v5 transcripts | |
|---|---|
| PF02309 | |
| Zm00001eb129570_T002 |  |
| Zm00001eb129570_T001 | |
| Zm00001eb129570_T003 | |
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d040541 | DAPseq |  |
sequence | fimo | position |
| Zm00001d040541 | DAPseq |  |
sequence | fimo | position |
| Zm00001d040541 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d040541 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmIAA6 is the regulator
Interactions where ZmIAA6 is the target
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Zm00001eb129570_T002 from maize genome v5
Amino Acid Sequence
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MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPLFLGSVKKLRIARTDRVES
MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPLFLGSVKKLRIARTDRVES
MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPLFLGSVKKLRIARTDRVES
MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPLFLGSVKKLRIARTDRVES
MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPLFLGSVKKLRIARTDRVES
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
| Domains Present | |
|---|---|
| PF02309 |
|
| Hover here to show all domains | |
Nucleotide Sequence
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CCGTTCCGTTCCGATTTGACGAGTT...
CCGTTCCGTTCCGATTTGACGAGTTGGTGGCTGCTATAGATTCACTCCACCCCTCTCCATTTCTGATAAGTATCCAGCTAGCTACCAGTGTATGCACCAGGCAGCAGCAGCATGGCGGAGTGCAAGGACGACGACAGCGGCCGGCGGTCTCCGTCGTCGTCCATGGACAGCAGCACCCACCCCCCGGCGCTCTCCACCGCGTCCTCGGCCTCCCGCCGCCCGCCGGAGAGGAGGGACCAGCTCAGCCCCGACCTGCAGCTAGGGCTCAGCCTGTCGCCGGCGTCCTCCGCCCTCCTGGTAGCGGAGACAAACAACAGCATCGTCCCTTCTACGCCAAGGAACCAAGCACTCCCGGATTGGCCCCCGATCAAACCGTTCCTTAGAAGCGCCCTGACTGCCTCGGCACGCCGACGGCGAACGCTGTTCGTCAAGGTGTACATGGAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGATGTACCGCTCTTTCTCGGAAGCGTAAAGAAGCTGAGGATTGCGAGAACCGACAGAGTGGAGTCGTGA
GRMZM2G074742_T01 from maize genome v3
Amino Acid Sequence
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MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPWELFLGSVKKLRIARTDRC
Nucleotide Sequence
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GCCACACCAGCTATATAAACACAGC...
GCCACACCAGCTATATAAACACAGCTGCTCTCCTGCTCCCTTTCCCTTCCCCCCTTCCGTTCCGTTCCGATTTGACGAGTTGGTGGCTGCTATAGATTCACTCCACCCCTCTCCATTTCTGATAAGTATCCAGCTAGCTACCAGTGTATGCACCAGGCAGCAGCAGCATGGCGGAGTGCAAGGACGACGACAGCGGCCGGCGGTCTCCGTCGTCGTCCATGGACAGCAGCACCCACCCCCCGGCGCTCTCCACCGCGTCCTCGGCCTCCCGCCGCCCGCCGGAGAGGAGGGACCAGCTCAGCCCCGACCTGCAGCTAGGGCTCAGCCTGTCGCCGGCGTCCTCCGCCCTCCTGGTAGCGGAGACAAACAACAGCATCGTCCCTTCTACGCCAAGGAACCAAGCACTCCCGGATTGGCCCCCGATCAAACCGTTCCTTAGAAGCGCCCTGACTGCCTCGGCACGCCGACGGCGAACGCTGTTCGTCAAGGTGTACATGGAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGATGTACCGTGGGAGCTCTTTCTCGGAAGCGTAAAGAAGCTGAGGATTGCGAGAACCGACAGGTGCTAGATAGCAAAC
Zm00001d040541_T001 from maize genome v4
Amino Acid Sequence
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MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPWE
Nucleotide Sequence
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TTTTATTTGGCTTTTGTCAGCCACT...
TTTTATTTGGCTTTTGTCAGCCACTAAGCCCTCTCATCGCCACACCAGCTATATAAACACAGCTGCTCTCCTGCTCCCTTTCCCTTCCCCCCTTCCGTTCCGTTCCGATTTGACGAGTTGGTGGCTGCTATAGATTCACTCCACCCCTCTCCATTTCTGATAAGTATCCAGCTAGCTACCAGTGTATGCACCAGGCAGCAGCAGCATGGCGGAGTGCAAGGACGACGACAGCGGCCGGCGGTCTCCGTCGTCGTCCATGGACAGCAGCACCCACCCCCCGGCGCTCTCCACCGCGTCCTCGGCCTCCCGCCGCCCGCCGGAGAGGAGGGACCAGCTCAGCCCCGACCTGCAGCTAGGGCTCAGCCTGTCGCCGGCGTCCTCCGCCCTCCTGGTAGCGGAGACAAACAACAGCATCGTCCCTTCTACGCCAAGGAACCAAGCACTCCCGGATTGGCCCCCGATCAAACCGTTCCTTAGAAGCGCCCTGACTGCCTCGGCACGCCGACGGCGAACGCTGTTCGTCAAGGTGTACATGGAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGATGTACCGTGGGAGTAATGTTTCTTCTCCGCTCAAATGATTCACTCTTGCATTTCATTTACTGTTAGTTAATTAATAGTCTTGTCTCCCCGTCCATTTTTTCCGGCAGGCTCTTTCTCGGAAGCGTAAAGAAGCTGAGGATTGCGAGAACCGACAGGTGCTAGATAGCAAACTTTTTCATGCGGTGGATCGACTCTGTTTCTTCTTCTTTTTTTAATATATATTAGGTTCATTAGGAAAGATTTTGCTGAACAGAGTGGAGTCGTGATGCTGAGGCTATACTAACCGTGTACAGTGTACTGAAGAAACGCCAGCCTTGCTACCATCCCTGCAAAATTAAATTTTGGTATTTTATGTTTCCTTTCCTGTTTCTTTGACTGCCTTGTAAATACCATGGTTATTTGTTAAAGAACAAGCAATTTGCATGGAAAATATTATAGTTCCAAGGTAC
Zm00001eb129570_T001 from maize genome v5
Amino Acid Sequence
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MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITYADAVEYHQRVPHEKAA
HVLTYEDHDGDWMMVGDVPWELFLGSVKKLRIARTDRC
Nucleotide Sequence
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CCGTTCCGTTCCGATTTGACGAGTT...
CCGTTCCGTTCCGATTTGACGAGTTGGTGGCTGCTATAGATTCACTCCACCCCTCTCCATTTCTGATAAGTATCCAGCTAGCTACCAGTGTATGCACCAGGCAGCAGCAGCATGGCGGAGTGCAAGGACGACGACAGCGGCCGGCGGTCTCCGTCGTCGTCCATGGACAGCAGCACCCACCCCCCGGCGCTCTCCACCGCGTCCTCGGCCTCCCGCCGCCCGCCGGAGAGGAGGGACCAGCTCAGCCCCGACCTGCAGCTAGGGCTCAGCCTGTCGCCGGCGTCCTCCGCCCTCCTGGTAGCGGAGACAAACAACAGCATCGTCCCTTCTACGCCAAGGAACCAAGCACTCCCGGATTGGCCCCCGATCAAACCGTTCCTTAGAAGCGCCCTGACTGCCTCGGCACGCCGACGGCGAACGCTGTTCGTCAAGGTGTACATGGAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTATGCTGACGCTGTGGAGTACCATCAGCGGGTTCCTCACGAGAAGGCCGCGCATGTTCTCACCTATGAAGACCATGATGGAGACTGGATGATGGTTGGGGATGTACCGTGGGAGCTCTTTCTCGGAAGCGTAAAGAAGCTGAGGATTGCGAGAACCGACAGGTGCTAGATAGCAAACTTTTTCATGCGGTGGATCGACTCTGTTTCTTCTTCTTTTTTTAATATATATTAGGTTCATTAGGAAAGATTTTGCTGAACAGAGTGGAGTCGTGATGCTGAGGCTATACTAACCGTGTACAGTGTACTGAAGAAACGCCAGCCTTGCTACCATCCCTGCAAAAT
Zm00001eb129570_T003 from maize genome v5
Amino Acid Sequence
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MAECKDDDSGRRSPSSSMDSSTHPPALSTASSASRRPPERRDQLSPDLQLGLSLSPASSALLVAETNNSIVPSTPRNQAL
PDWPPIKPFLRSALTASARRRRTLFVKVYMEGVPIGRKLDMLLLDGYSSLLAKLCHMFKASITCKYICN
Nucleotide Sequence
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CCGTTCCGTTCCGATTTGACGAGTT...
CCGTTCCGTTCCGATTTGACGAGTTGGTGGCTGCTATAGATTCACTCCACCCCTCTCCATTTCTGATAAGTATCCAGCTAGCTACCAGTGTATGCACCAGGCAGCAGCAGCATGGCGGAGTGCAAGGACGACGACAGCGGCCGGCGGTCTCCGTCGTCGTCCATGGACAGCAGCACCCACCCCCCGGCGCTCTCCACCGCGTCCTCGGCCTCCCGCCGCCCGCCGGAGAGGAGGGACCAGCTCAGCCCCGACCTGCAGCTAGGGCTCAGCCTGTCGCCGGCGTCCTCCGCCCTCCTGGTAGCGGAGACAAACAACAGCATCGTCCCTTCTACGCCAAGGAACCAAGCACTCCCGGATTGGCCCCCGATCAAACCGTTCCTTAGAAGCGCCCTGACTGCCTCGGCACGCCGACGGCGAACGCTGTTCGTCAAGGTGTACATGGAAGGCGTCCCGATCGGCCGGAAGCTGGACATGCTCTTGCTGGACGGGTACAGCAGCCTCCTAGCGAAACTTTGCCACATGTTCAAGGCATCTATCACTTGTAAGTATATATGCAACTAGCCAATAAGCTCATCATTACCACAGATTTTTTAATCAGAGG
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